PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915252
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 114aa    MW: 12936 Da    PI: 10.2175
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915252genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.3e-16451113299
                --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
         B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                ++ t+ + +   + We k+ + +++++ +l +GW +F+++n+L++gD+++F+l+++ ++ ++ v+++++
  462915252  45 RGETV-VLQCGRKIWETKMVIHNGRRW-FLNGGWPKFARDNDLRVGDICLFELKKNeDKLTMAVHIISR 111
                44344.45557899*****77777766.6999**********************99999******9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010197.7E-420112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-1830111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-1730110IPR015300DNA-binding pseudobarrel domain
CDDcd100172.05E-1535110No hitNo description
PfamPF023626.1E-1441111IPR003340B3 DNA binding domain
PROSITE profilePS5086311.47656112IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MLPGDGGGPE LCLPGEPSGR LRKRGHVAWR AELGSRYASV HLPARGETVV LQCGRKIWET  60
KMVIHNGRRW FLNGGWPKFA RDNDLRVGDI CLFELKKNED KLTMAVHIIS REQF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982416.17e-41PREDICTED: B3 domain-containing protein Os03g0619800-like
SwissprotQ6AV223e-23Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A0A9EDT21e-52A0A0A9EDT2_ARUDO; Uncharacterized protein
STRINGSi035278m7e-41(Setaria italica)
STRINGSi037821m2e-41(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-09B3 family protein